Scaffold Ga0326769_000449

Overview

Basic Information

• Taxon OID: 3300033894
• Scaffold ID: Ga0326769_000449
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17391
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068875	Metagenome / Metatranscriptome	124	N
F081384	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326769_000449_6978_7568	F081384	AGG	MLITPSDFGGDYRLFNANNLDPDTIQAIDQAQAELARDLFPVGHSFITGNLPSAPPNLGLRALGLHNLFVPWVFLRLDLGILGAGVKRTSDVPGRSRFASGAFFAIARQYKYFLGEWLPYERYIDAVASSPTLLAVPIVVSQIVAPGMEIEISGDKYSVVASTTGLLTISPALPSGVTNLRFRQLSLCVDKTWNYL
Ga0326769_000449_9637_10542	F068875	N/A	MALQCRCGQPIEAFGVPSCYTKMAPIVKLIFTTRPNQLITDPATQLELSPTNISFPDIYRLITPRLDDVSSERPEAVTEEIGATTYYVRDAARTITATVGQLPTEWAQRVAELRCQAEVGVFLVDANGTIWGRKVDTQTGVAGAPLPVVPSSIDARFAFPSYSSVQKHTITFQLPFTLADYEIIPLWNNGDVLNYSAPQPVGFRVFQQSGNWVVFLFSKYHAPNGTIVVPIANVANPADIEIYDASGTTLVASANANLGGGKYALNTTLAAGTQYILDCTAITSPPSTQFDWPALRVPFR