Scaffold Ga0326767_004036

Overview

Basic Information

• Taxon OID: 3300033892
• Scaffold ID: Ga0326767_004036
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2545
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F023140	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326767_004036_2086_2355	F023140	N/A	VFGAGILTTLSVLILFFYFLDAKFVGTWAILQKFAVTLPTSFVLSHLVKLLPINPLLDYIILFFVGYIISTPLIFLTYNVTKWLYWKKR
Ga0326767_004036_965_1405	F011097	GGAGG	MIRDIPLYTSGGTDPFTNLPTGGGPITGNGSNGQLLRFHPNYARLLIFITGLSGTSPSIQFTVGSYYGSNFYTLPPITSAIYIYVIGNENRTIITYLNTSGQVLQQVELPYNIFLNGVNVSWSVSGTSPSITTYIHFEFEDEEEGE