Scaffold Ga0326767_002539

Overview

Basic Information

• Taxon OID: 3300033892
• Scaffold ID: Ga0326767_002539
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3433
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Saccharolobus shibatae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F030159	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326767_002539_2503_2943	F011097	GGAGG	MIRDVPLYTSGGTDPFTGLPVGGSPITGNGSNYQLLRFHPNYARLLILITGLSGTSPSIQFTIGSTVGSNLYTLPPITSPIYIYVIGNENKTIITYLNTNWQVLQQVELPYNIFLNGVYVSWSVAGTSPSITTYIHFEFEDEEEGE
Ga0326767_002539_2945_3385	F030159	AGG	LVTVPSLIFGQTSPGGSYYVIAGANGFNSIYHGVVAHTFGKKYARVYLNINAGNGAFVNIYTRYRSRTAPDLQQMYGNSPNPNNTATYYPSVERNFGTLVYATDYSYNMPYATDYSRTSKFRVDDQVLWVLTRDGYGPVWVELEGD
Ga0326767_002539_331_879	F021133	N/A	MAKRDDLIRQIYENGNFVIKKICEMEPDDKMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCKLHIGKPPKPYDFIVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIIELQKEYITNIFKLK