Scaffold Ga0326767_000311

Overview

Basic Information

• Taxon OID: 3300033892
• Scaffold ID: Ga0326767_000311
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15055
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (51.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038746	Metagenome	165	Y
F070689	Metagenome	123	N
F103565	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326767_000311_162_434	F038746	GGA	MVIRTPKDLEEIRNNIDKYKSELKDGELIEIQIAKSGKYMLKMSLSKEGVKFEISGEDKKQALIMQNKDDAVALQKLIQILLAIAFNKPN
Ga0326767_000311_1698_2012	F070689	GGTGG	MTLEVNYNVYRRIIQFAKTSDKPIPILRYKLPDGISKGDVIKIRSVQMASRTKTLIAEVVDIKEYDVNRDDIPYDELKPIYENYINVIPKLGQVVIVYVKPINF
Ga0326767_000311_3548_3841	F103565	N/A	VSDTIINAVMYAREIAKRLLEKEKFKGYKAICKVPNYSTNNTPTYVLLRLKNKIGIPIAVGDDVKRLFEVSPYVKVIVVPALTTAVKTPEEALALLA