Scaffold Ga0326767_000071

Overview

Basic Information

• Taxon OID: 3300033892
• Scaffold ID: Ga0326767_000071
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44534
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052705	Metagenome	142	N
F061391	Metagenome	132	N
F063846	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326767_000071_28023_28550	F061391	AGGTGG	VSEVIQTPIDITELLTLTGRSRVLTEKVKRCYALVTNPKTFEGVAASLRGYDAASGGWFIPRATHAKQVIQPIIQECVVEPLTMVATGNDAHSLVTLAEFADMLGVDVDVRAVSLQDIIELKLSSCLPQGDGKKPPAYADLVNATNNCLREIVTKALVTLEHVGATVAFTSRRGE
Ga0326767_000071_34887_35306	F063846	N/A	MRINSDALIGLGAVAVLTAILLFIAWYHTYPQLTCAYVSTHYANHVLTVLVNFTCNGNLYAVWDVNAGNCIYNYNASQQLPVTNSFLSWSNYVAWNFTFTCTKPPSNVTVDLTTPAGAGYAQCHYLLTVPTNATMSVKC
Ga0326767_000071_38992_39255	F052705	GGTGG	MGSLDLLPTLLMIATGVALTVAGVAGGLAGMYLMLVLIPIGLAATVLGLLDYTWFTRGGEPTPLTLLAILLSEAAAVLAIILIEGWV