Scaffold Ga0326767_000046

Overview

Basic Information

• Taxon OID: 3300033892
• Scaffold ID: Ga0326767_000046
• Source Dataset Name: Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59051
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (44.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7535
  • Long. (^o): -110.7249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076261	Metagenome	118	Y
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326767_000046_10733_11137	F076261	AGG	MIGGVAFQLGNATGSSQIVSSAVAYFAPVFNAIMAFLGVAFWASLIFLVYYGIEAYIHPTPFGRSARLASMYDHAKGIIWSIITIYLVLAIIAFAVNQASAAAGAGTSVSVGQLFYYVFVKPVVTGFKVLFSSI
Ga0326767_000046_30140_30463	F101502	GAGG	MSQVSKAPIIAFTVILALGLGIVVIGASEPMKPGVGAVIVLLASVASALAYIWLRHPGLLITIELGVGVFLVIIIVNWLHGISPLTSLRWYYNALRTLITPLARLKP
Ga0326767_000046_30515_30910	F105516	AGG	MPKAVVRVLALGRVSLNFKTFRVIENERLSITDDGTVKCLGGGCSANGVFITLEADRPNARELYDALKKVRVLELEVEIHDLPKWLLSRLEFLTGAISGDAKVKYTWRSMPSFEELALVLNDLNLNGVNPY