Scaffold Ga0334792_008582

Overview

Basic Information

• Taxon OID: 3300033888
• Scaffold ID: Ga0334792_008582
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4208
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334792_008582_1901_2338	F042119	GAG	METIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLRGPEVKIVASQHEDVSVPQVQLALF
Ga0334792_008582_2731_3156	F004301	GGAG	MTAMQFSLFDARSADATVGSEPSVNARNAKRQLDTLRNQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLELKLAALSQIIGNAIQ
Ga0334792_008582_3153_3656	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAATTFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ