Scaffold Ga0334792_008535

Overview

Basic Information

• Taxon OID: 3300033888
• Scaffold ID: Ga0334792_008535
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4223
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002004	Metagenome / Metatranscriptome	605	Y
F006559	Metagenome / Metatranscriptome	370	Y
F014080	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334792_008535_1950_2156	F014080	N/A	MGTVQEGGDRLRFVTDQRVWNVDNPEILEGHEGHYVHATAYVYPDNNSIHITEVKIPTASETKIDDMK
Ga0334792_008535_3165_3389	F002004	GGTGG	MKKIPNSSRHLSEHILRALNKIRKPSTAGEITELLNRDLDLEDRPFQAKDVAEWLRNTDDTALTLYWPRARPRK
Ga0334792_008535_3972_4136	F006559	AGTAGG	MISSAGQPEEQPDLKKPTALRGAVGVWDRESGDRIKGCDGACLHAFGSLAGAGG