NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_035008

Scaffold Ga0334790_035008


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_035008 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013632Metagenome / Metatranscriptome269Y
F014987Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_035008_1_273F014987N/ALLALRDLIADTDLTLETIPNLPQNRTAHCRENLRAALALADDLIKQSKMTAAAVMGHKGGSTTARKLGPEHYRRMAAARKTHGGGRPKKA
Ga0334790_035008_1353_1550F013632AGGAGGMKTEPATQFPECHEGPEAFKRFDEEMKFLLSVPHTTIARRARAYKKKSLKNPNRPGPKPKINPSV

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