Scaffold Ga0334790_022058

Overview

Basic Information

• Taxon OID: 3300033887
• Scaffold ID: Ga0334790_022058
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2837
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005822	Metagenome / Metatranscriptome	389	Y
F014867	Metagenome	259	Y
F072644	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_022058_1_474	F014867	N/A	TFVSAALILVIPRFGILLLEILLGLFFIGCALVARKRLRRQALGQDSSDKSRDARTRWFDRYDVFMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPRAVEFIEGRRKTKQAGRNGNNLTNFAAHAPATEAGTKTVVHAPTKNGDLE
Ga0334790_022058_471_869	F005822	GGAG	MKVSEQPNAVNGAESIADSKITHPPASEGRRSRAVTDSKPTLPRNATRRRRNRQDNSETSGEERFFLASGGGDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFHTRADVGPSGEPILRKDGLKKNNPAS
Ga0334790_022058_891_1199	F072644	AGGA	LKHPDFLGLCCSVRGGTTSLAVKKEKPMSERNQIVVVLIVALMLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGGPSVREYRGGATTVQAS