NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_011125

Scaffold Ga0334790_011125


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_011125 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4687
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y
F079850Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_011125_1567_2064F079850N/AMLIDNKDKTVVAESDLDKLVRDAKERNVPVGIIVAKEESQLRQVDKEDRWGQKDGVWILRTTRQWLPRDLDVLKPLFERMRTQGSDFLEKNAALGEEVRRTFADLDRVESELKKAAKAIGSASGLVAKYRGRLQELCDNSSTQRVPQRSQRPNSNGLGTVSRAEV
Ga0334790_011125_2740_2955F001432AGGAGGMSLQKEFIRDGKRRIIGSVTSGFSDESAVVRDGDNEIVGRTSGRYDTTRDDHGNLVSINSPDPGLLIGKHK
Ga0334790_011125_3072_3470F015081N/AVITQNIVLNSYRFSRSTGYNSNAGECVHPYYSGDKEIGLEDLIQEQRGLARSKTPFERVVGSLCIGAILKQQLVRLPNSAISRLLTDQIWSQLNLLEPESVIVEIASERLVEKREASLVCPECGAEFWRADE
Ga0334790_011125_3463_4032F006683GGAGGMNKPDRAVRQVDLKVNGITFESVRLRRSSGANDFDIVIDDPHVGRFALTPAVPNLELRDEDSNWRQVTLEELKKILADDGELAEVAEEPQASEAVERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFASNLFMVLSVSKAKACLQRAGFQAKFDSETVLFDGCNGQAIQLLQGKYRLPRAKS
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