Scaffold Ga0334790_001620

Overview

Basic Information

• Taxon OID: 3300033887
• Scaffold ID: Ga0334790_001620
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18651
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005983	Metagenome / Metatranscriptome	384	Y
F006433	Metagenome / Metatranscriptome	373	Y
F007657	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_001620_4571_4774	F006433	N/A	MTDAIYRIVHRQDDSFAVEIARSGALAQTAAGFTTEAEARNWIAQDKRLWDAVDPFRAQAGRRWRGG
Ga0334790_001620_6018_6278	F005983	N/A	VPNHRQVTTRKQETIMQADADYVGQISYDYDEFCKDYGHPAGRMFTFEVTHRAITYVYADVIGQVEGDEVVFSLDASDLVQTRKAH
Ga0334790_001620_6391_6594	F007657	N/A	MNWVTFQTVDGGLVVVQLRHIVAIYDEQGQVKLATAAGGEHVLKDMTVQRAAARVAAVVEADVAAAG