Scaffold Ga0334790

Basic Information
Taxon OID	3300033887 Open in IMG/M
Scaffold ID	Ga0334790_000491 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033887 Open in IMG/M

Scaffold ID

Ga0334790_000491 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37385
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (60.87%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

37385

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (60.87%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3534	Long. (^o)	19.0473	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3534

Long. (^o)

19.0473

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F025759	Metagenome	200	Y
F054329	Metagenome / Metatranscriptome	140	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_000491_20806_21138	F025759	N/A	LKTDTTQSRLPSGSWLANWPPVYIGKESDKHWEEGEDLSLLDFKAIEYKRKGNAIATEEQLVRIGKVPKRELMRRGINQHTLEKICKREPVRAIKLAECLIVLGECGRAQ
Ga0334790_000491_26014_28167	F054329	AGGAG	MNRISALLIITVIVIVALMVAAVTYPVQAQQQPTSSGTSQPENVPDVSYHLTVMMPQYRFLDTSGYGGRVGEYDSLQQSLGGYLSFDYVDVPEHMTIKSTWDILSRDDYDLKSRITFGKWLDFTLDNRSFVHHLDDTSYFGAAVISPDLIRIDTIPPDSLLGIRRRMNNASGKVQLPKIPVKLFVKGGWQARDGNSQMQYFDMGGNGTLTDTGCDNCHSASQYRTLNYTTRNIAGGAEVKFGSLMKLVYQHEFRSFNDRMPNPSDIYGTSNPNGDNPPANIPYTPAGYYVHSVLPRNQTQSDLLQVSMAVAHHVTLNGDVSYARTINLYIPPAPRALDTGNHSQNSFNADATLIWNPVSQLRAVADFHQQNLINEFVSQYSLADPTVFYAFGNPSLHRHWGGLKLAYRVSKQFDLETHYTPMNITRSNSGLWPQFSSPDNTDPLYIVPATFSNIAGAAVHYHSAELWNARAGYEWTGTHDPGYVTDPHTNNRLFGDVTITPVHWLTFGNDANVALQKSFPVVQRTNHLYVDSLFVTVKPVPKWSVGGAYTYLQDNLRTDMQLANDPAVGVYTQPLVPYKQLSQTFSAHTTYELAKRIGLNLNVARSLAHSGWRPDLNPADYPNFPGAVSVAGYPSEAAFAAAFSNALGIGSGPVSQVNVPQTLVGATGNYHLRAGFDGGLRFNYGSYTDNTIWNTSGVRPNVNGKLQSYSVFFGRVW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334790_000491

Overview

Ecosystem & Geography

Associated Families

Sequences