Scaffold Ga0334790_000263

Overview

Basic Information

• Taxon OID: 3300033887
• Scaffold ID: Ga0334790_000263
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55863
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (63.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034435	Metagenome	174	Y
F065349	Metagenome	127	Y
F098444	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_000263_2286_2528	F065349	GGAGG	MPTTKTQRLIDLMRAGDWPRALSLANTFRWLGPHRDTIRLAHACRVHPRFYRGLGRDPEATTAAGIAALRELYPTNRSQP
Ga0334790_000263_2752_3189	F034435	N/A	MATRTRRKPSPATLAERAKYERRTGMNTRASIITAKALIVKPETVEDDCGNIVRVWQKSELLSWTFEQLASTLRNRVAVEPNEMLGTVPPSAIKWATNKGWIVPNTSKSLYSVTLRGAIDLNLPLRFKGGTSHGRKIPFAANPTA
Ga0334790_000263_35938_36321	F098444	AGGTGG	MEGTLRGVPISVQPIFLAPKLPTGVRICRVPINPLDAQLLSELSLVAAPSGSGELVISGLAYANEIVTFTAAGGQPTRCYTLLLTATRSDSQVADYLLKIQIDAVLVTDQPQSAPSAGFGTALTWAA