Scaffold Ga0334790_000032

Overview

Basic Information

• Taxon OID: 3300033887
• Scaffold ID: Ga0334790_000032
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 180908
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (73.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002289	Metagenome / Metatranscriptome	574	Y
F004753	Metagenome / Metatranscriptome	425	Y
F007078	Metagenome / Metatranscriptome	358	Y
F012485	Metagenome / Metatranscriptome	280	Y
F035732	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_000032_12916_13176	F004753	AGG	MDDETDANDVRPHASREMGSDAQELVRDWEFLFWAFLMFGLARLAWLYLYRPQNAAFHLGLSCGFVFCGVLGFLMRWVLSPKMKRH
Ga0334790_000032_20130_20495	F002289	GGA	MMVEPVVQLDSGVDLQAAVDALTKVAENVEIVRWIELPASVLLFLLVPGDPDSGAVYVLDSKKGIWYAVDFEDEQFGGYSVSQLEMLLKDCNFLDLIERPGLWRAGLPWIVLPGTRPEAA
Ga0334790_000032_22299_22532	F035732	AGGAG	MHERLKNYALVICLFVFLFVCIGNGLHLTSGAAFIGALSGTPLVIFAFNRWCDARCRREEARRGEPASEIIPLRERR
Ga0334790_000032_82084_83058	F007078	GAGG	LQKTKNYTRRNSAAQLQRAARERADDEACRIPWQRLYDARNQYIDWQEFTLWARSILEVEEGIPDWLAEILDERCPGFLQTEKELTPKAAKNRPLPLRLEDWIDEHVFDFAKKEGWFNAITYYAIRDPRYQRAEVCWSECVEKWKKARPLRYPSFEEWKGLAAECDETSRLVAGEREARSSSKLVDPDRLREAVSRYIDWEALAYWARPALERCPQLPAEVVCELERRCPGFFGLNAPQKDSRAASQAWQRLMLWIADHYFQDAKTEGWFDAILAQTRSHPRSIRTMEYADHCDEQWGSRMPEPYPSFENWRREADSYVEELGE
Ga0334790_000032_85603_86211	F012485	GAG	VPSQEFSPEWVLSNSSSRTKEQSLSRDDELITAASRLWPRVQAHARKELANQNPDESAALAAEVWESVLQSVSKTLRRRNGKASGIVDLEAYLFGAFLHRFNRALKKERRRQETIGLVASNVDLAELPGARDTKSSRAVEDAIQVKEVVQNMDAWTRKVWTARQYGYSWREIAEHMGLSEHQAKLRFRYALRKLAARLGYGK