Scaffold Ga0308413_021189

Overview

Basic Information

• Taxon OID: 3300033886
• Scaffold ID: Ga0308413_021189
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2248
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_021189_178_492	F002372	AGGGGG	MPTRREDMLWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIVELLRVREHAPPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSMGGAEGV
Ga0308413_021189_492_767	F002795	AGGAGG	MATNSGLVLRGMVASYREFISRKDGKTYRVATVFGDLMAGGTVLCQVDGYDVFVDSFYTRGEMVELPARMQFLRDGSGRPVIKLYVDQGVR
Ga0308413_021189_754_1101	F002229	N/A	MEADMVTLLTFDGVEDVDYTPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVICNRRVTATLAAVGWCWVADGLGRGYWSPALACVPADVRSMCGGCADDEDEEGGDGDE