Scaffold Ga0308413_019492

Overview

Basic Information

• Taxon OID: 3300033886
• Scaffold ID: Ga0308413_019492
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2392
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011548	Metagenome / Metatranscriptome	289	Y
F020180	Metagenome / Metatranscriptome	225	Y
F026891	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_019492_1043_1558	F011548	GGAGG	MVVISGVELVQDSLLWAAQSGSERLRLIADSGVQVRRVGERVYVAHALPMPATRTVRLMPTTKYREPYHLRIDDSCRFGVIPADAQVWSDSIGGIYASGCAAVQMSIINPPAFISIVRKHKLVYQLHYIALLPSGELREMGTKRDVLLLAKTGEPLALQLARLLGDDEDFG
Ga0308413_019492_1560_1826	F020180	GGAGG	MSYDAKRWYITRCSCAKPILYQDLDRYPLRCAKCGGHVYTEPRPPHFERLSRAPIVDFRAILRVLGWCVLGLLGYLAMCILFVVLGGL
Ga0308413_019492_1816_2382	F026891	N/A	MTIIAGTPIEANREDGRLWYAQNGAKRTRLALYAAQGVHIERVDTEVYVARGAVPVWTGEEWHREAAVYLYPAEKHELHAVWLNSHCGFAVVPKDAVLWEASSFGGPKNSESKIAVLETGCYVEEYTYKRATPSEWFAITLDGAVRRLGEKSRVIALALRGDKDAARLAELKGWLSELTKQLEVQDEL