NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_013678

Scaffold Ga0308413_013678


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_013678 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3063
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_013678_1710_2030F002229N/AMEADMVTLLTADGVEEVDYTPSDAEIRLSLDDASLYGMLLRGVTWMRLPSGAGWWTVLFGRRLTVTLAPVGWCWVMDGLGNRGYWSAALSAVVADVCAMYGGAVED
Ga0308413_013678_2049_2276F008135AGGAGMNDPRTERVLTEAGAAVARVLDARQRHAVALALEVCSYIVAALPPDNDVTFGDMVRLIKWFAGGFKDAEADDGDG
Ga0308413_013678_2296_2535F002795N/AMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIKLYVDER
Ga0308413_013678_69_275F002978N/AMVVPWADRRLWFIQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSSLPSPLPGAPPGSGA
Ga0308413_013678_731_1036F004024AGGAMPSERDYLRQPLNDDDMMFLDARATLAAALARAVVGYSDGRVRALAWLSIATPRLYERIAPIIESAAIRQSPGASRMLRDALRALSLEEYVRRRDERRSER
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