Scaffold Ga0308413_008312

Overview

Basic Information

• Taxon OID: 3300033886
• Scaffold ID: Ga0308413_008312
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4352
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029452	Metagenome / Metatranscriptome	188	Y
F036249	Metagenome / Metatranscriptome	170	N
F050402	Metagenome / Metatranscriptome	145	Y
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_008312_1250_2401	F092114	N/A	MEQLLGDNPPKRDTWLLKCKRLREIVGNLPSNQIITTSIPEGHSNLLLINIMIKAHAMMQLLRGTVVDFADDNEPYQMQFAEFLASNELALRDAIMQRLVVGLGAVCVVGDKQKGWRLQSISPNDIWWDCTTGDVMQPKWIARGYRDSENNDYREVWYADVYHRYKVGNADVDTHTNPYGVIPIVLFPANYIPDTVYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFSVKRSSIDESELSRLQNPDEVYVLVNEQDAIMPIPTPAPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKYATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPNGTAIPRALEDSIASANQLLRTDMVGNAPSGNISATQSV
Ga0308413_008312_2_784	F036249	GGAG	MQFNPNTSHYASAIGAWLDSNFRDQFTVTVAFMEKLKQRGAFKRGSAYLVQPVFGTGNNTVAGVSNFNNPMSIPADSGLSAVYTWSWYQGLTVVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVISNDLFTDTDASLGKIAGIPYAVNRPTTVPNSFGGINRGNTPNPWWRCVLVDAGNQPLTLQRLAQAYNLASENGGISPDIIVMPTQHFTAFESLLLATQQYKQDDEIARAGFSGYLFRGATVLFDPRVPTNTIFI
Ga0308413_008312_2437_2706	F029452	GGGGG	MIVYEYRCPECGWITAVSRWVDQRDVCPRCERCGTLTKRVFPPRAQIVVPRAFSLECAREAAKLVLPQNDAEKRYWDTFGIMDSDGDGE
Ga0308413_008312_3769_4293	F050402	N/A	MFSKLPTTRKGTIAERYVRDVLTGMGWHIYTYSADQSHPVDMLAFTPENQLVAVEVKCKCARIYYPDTGIDRNDYYAYHQFQSQLNLPVLLLFVDNYSRTVYGNYLDYLSQPLTIIDNQRELVYPMIVERYVYFPLQAMEHYADIPPAIVAQLNTRTHSKYHHPLPTTTDCDGV