NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308413_008178

Scaffold Ga0308413_008178


Overview

Basic Information
Taxon OID3300033886 Open in IMG/M
Scaffold IDGa0308413_008178 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4405
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002978Metagenome / Metatranscriptome516Y
F009403Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0308413_008178_3212_3664F000642GGAGMQEMSVVLALCAVGAAVWYMRRREAGAGRVCGWLLLYDAVGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWIDLLRVLGVVLPAAFAYFTWAQVASLQALVAQILALVGK
Ga0308413_008178_3671_3895F002978GAGMRDWRVMLVPWADRRLWFLQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPAVLPGSPGAPGA
Ga0308413_008178_508_819F009403N/AVFRITRRGRGSGRAPALSVVRSGDRLEVREGRYGQGACYAWCDVDDSLAAHTLLLTFADMRARVIYICDPLPLISERRFFLICSGDVDPDSLPDADSLPDADS
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