Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_005933 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5445
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5445

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F007172	Metagenome / Metatranscriptome	356	Y
F009403	Metagenome / Metatranscriptome	318	Y
F012676	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_005933_225_494	F012676	GGA	VVTDSVERNDMNSTKIAAGWDGSPMSLTHPEHGWIRFLEARGIAYATYLSEPAGWRIVVEEEEKFMRLIPKLRKYNIHGIYEWTYDIHP
Ga0308413_005933_2321_2644	F009403	AGG	VFRITRRGRGSGRAPALSVIRSGVRLEVREGRYGQGACYAYCDVDDTLAAHTLLLTFADMRARVIHIHDSLPLISERKFFDACSGCRPVLPDCDSLAGADADDSFFQ
Ga0308413_005933_4248_4601	F000855	AGGAG	MDWLEDFFSKVVSWLDERTANIYNAVVAFVNVLVDVWNGWMDALLHPAQAMPSIPELRWVVDWLGGIADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS
Ga0308413_005933_4604_4768	F001381	GAG	MQYVVATLYVLLWLALAAAAALWLPIWALPAALVQLAVAYVMLRAVWLTVARDD
Ga0308413_005933_476_718	F007172	AGGAGG	MTTPNALTALQRRAFADALRAAKNNAYCRAVGGFVIVRMSDGTIDWFPAGQPPHRGGEPDRRATILGKWRWNHKRWSRIA
Ga0308413_005933_4955_5410	F000642	N/A	MQTISIALAVCACAAAIWYMRRREAGAGRVRGWLLLYDDLGGWRALPAAYSDSGIVADGVTYPASLPVLRVDRTLIWIARCDAAALVEHQALERARESAALASLWRGGGQWIDFLRIVGVVLPAAFAYFTWAQVSALQALVAQILTLVGER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_005933

Overview

Ecosystem & Geography

Associated Families

Sequences