Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_003414 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7621
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7621

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007404	Metagenome / Metatranscriptome	351	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_003414_3381_4829	F012577	AGGAG	MLIAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPTFARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMTDMKRWKPIGEGIIASSGYDSRGDLWEYESVESSGNLVVQIRTKKEFTISNTTLFFLVYLFDQPQRYIPVENEDHIFVSQISYTGLADGVWVAPVNALVQTSTHQLILGVFTDLSTDGNLTSPGCFGWTIGVRASGVETVAGTTSVSFRAEINNLQFGTIDEEKLTIALNERGGCCTIHLPPAINASITKPDANLRDIIENADGTAVRYPRKRFLRDRPQPTIDFRTDSTLVWRFPETTRVIDISKAPNRIYGQYPGYWADYLTAMTTIRSLETRRQLAKRFASVGEYDTKAIADTRRDEAAVALDRQIAPLTVELDNSRYELMLRSGETVPNWAADVSDYAIVPGYYRNAKITARVVTRERTTYTVSFNPDDFVTALR
Ga0308413_003414_6204_6533	F007404	GGAGG	MDIVEIFQLLAVGHAGLTALDYVWNAVFGAIGAATAYLADSEGEVILPHYDAEHYSVELGALGRVLVGAGAGVLVGYSGYVPFVAGVVAPTLLPILIDKVTAFAGRGRK
Ga0308413_003414_6530_6691	F014738	GAGG	MKLDILLPVSAFVLAFVHPDAAQVAATAVLVLLMVRIERGRRARKKKSAQAVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_003414

Overview

Ecosystem & Geography

Associated Families

Sequences