Scaffold Ga0308413_001715

Overview

Basic Information

• Taxon OID: 3300033886
• Scaffold ID: Ga0308413_001715
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11965
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F007172	Metagenome / Metatranscriptome	356	Y
F008135	Metagenome / Metatranscriptome	338	Y
F012676	Metagenome / Metatranscriptome	278	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_001715_267_560	F012676	N/A	MAPELPAMVKSSVGKEGAMTSIKLAAGWDGSTKALTHPEHEWIRFLETRGIAYATYLDEPPGWRIVVCDERRFTQLIPILQKYGVYGTHTWTYDIHP
Ga0308413_001715_4249_4602	F000855	GAGG	MDWLEDFWSKIVSWFDELSAGVHNGIVEWINSLVSIWNGWMDALMHPAQAMPSVPELRWIVDWLGDIADYTRLMYMLVDYVAYASVVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308413_001715_4605_4769	F001381	GAG	MHYVIATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRSWLTAAGGDD
Ga0308413_001715_4963_5418	F000642	N/A	MQTISIALAVCACAAAIWYMRRRDAGAGRVRGWLLLHDDLGGWRVLSAVYGDAGVVADGVTYPASLPAVRAGRELIWIARCESAALIEHQALERARESAALSSLWRGGGQWIDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK
Ga0308413_001715_521_763	F007172	AGGAGG	MTTPTALTALQRRAFAAALRAAKNNAYCRTVGGFVIARLSDGTIDWFPLGQPPHRGGEPDRNAVILGKWRRNYRRWSRVA
Ga0308413_001715_5442_5660	F002978	N/A	MLVPWADRRLWFVQARRGRRVVWGVVYDAADPESVALARRAVATLRAAGADCSALPASLPGTPPGAPGTSGA
Ga0308413_001715_6329_6634	F004024	AGGA	MPSERDYLRQPSLGDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPLIEASAIRQSPGASRTLRDALRALSLEEYMRRRDERRER
Ga0308413_001715_7322_7660	F002229	GAGG	MVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGAGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRALCGGCGGCVDDDDGGDEE
Ga0308413_001715_7670_7909	F008135	AGGAGG	MRAVIDPRTERVLTEAGAGIARVLDARRRHAVVLAVDVVWYIVAALPPDGSVTFGDVVRLLRWFARGFSEGVEVDDGDE
Ga0308413_001715_8171_8485	F002372	AGGGGG	MPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAV
Ga0308413_001715_8488_8898	F015735	AGGCGG	MMVYHHWSVEWHPRDIDPPGGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGPGYEVVWRLSVVAGDADGDAPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFADEHFRASPGYFGLE