Scaffold Ga0308413_001414

Overview

Basic Information

• Taxon OID: 3300033886
• Scaffold ID: Ga0308413_001414
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13556
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F002982	Metagenome / Metatranscriptome	515	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_001414_1002_1451	F004791	AGGAGG	MTKPAEIYDIDTIRVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGMRPNVATITLGEYHQFLDASERRIAFPEVAVTMLTKAYGDDILNEPYAAAALLLKKIFDSVAEEGNE
Ga0308413_001414_10422_11096	F007976	AGGA	MPSTELSNFLRVALDIQATPFSGIHVADGVAAATDGVMLVAKKFDLVFLRGEGAISPKAARVLEALAEGTWIGSIEVDGNRVTATAQTTRYDEKTGGEVAGEYCDVSLPEFYCPRAPVKRMLGVLTDESRGWETVAENPNVKVLKEMSARDYVALADEPRNGGELFRMKVDGDTHWYSVGQLRRGLRLFGKNSRLSVRRSSSGWLAFGDQWGYTFAVTTFVKHN
Ga0308413_001414_11238_11564	F002982	AGGAGG	MKIAFERTPTAICAVLTEPGECDRIISVSRASDAIDVFALDVSPAAYKPLDALFALSRVVCVEIERLEGGWRVEVAYWTKGLGTLAQYETDAAMLSEALARCVWALAR
Ga0308413_001414_11561_11917	F075805	AGGAGG	MRVRVWYGWRAVRGNRDVSQFAWIEFDGEPLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYADLEDAARRGWRDDLVRVGAYDAPVRELDEWLSQYEEEE
Ga0308413_001414_1464_1976	F005302	AGGAGG	MSHSGVIAGLYAGNFAVEISTDATTWTAVSNATVKVDDIELSRPSGEAYVGGSSDYATITVGKREPVELTLTFLYNEASNSAANTVYGLFESATPRLAVRWSPRGLVSDARAYATSNDGSTAGLGVITNVTLSALDPSDAEPYVLMATVRTPTLWQYTLGSNPTNLNPAS
Ga0308413_001414_1987_2448	F002970	GGAG	MSYSSVTDIIELLAGLAVQYNSAVVPVRRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLTRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPSV
Ga0308413_001414_5428_5778	F005631	GGAG	MRVSVSVDLDNALRKLLPRAPQIEAALDAGATAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSRTSRIVENTASYARYVYGMPQARVHSGRWASVRDAAEEAKKEAIAVLKGR
Ga0308413_001414_8854_9057	F016404	GGA	MTTEELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFDEQPNADQSVLVIVDEAAFVKTV
Ga0308413_001414_9054_9284	F010840	AGGAG	MNLPFSQPLDKITYGALAAATVVILAWALREFTGIDLPAEVQSALAVIIGYVVSYHIPLTEAEAEAIARKYYRNYK
Ga0308413_001414_9563_9733	F006418	N/A	VREIVIDSGDDFKIIFDRETRDYAVEYRGEPVGWRAFVEDARRLVEQLRYEDAKRA