Scaffold Ga0308413

Basic Information
Taxon OID	3300033886 Open in IMG/M
Scaffold ID	Ga0308413_000938 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17368
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

17368

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022362	Metagenome / Metatranscriptome	214	N
F070715	Metagenome / Metatranscriptome	122	N
F098168	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308413_000938_1_972	F098168	AGGAGG	MRARFQSDLVRDRLRAIRSIVREVVLERRIVFVEARNGKLSFSTRSGIAVGEVRFDADDKKIVIEEEGAAAFDANEFVSSIDRAAGEVVEIANGPDRDYIRFAATEYAFPKVAYSDHDRVSVSSSESPVVRFAFELEGIFARTVFASKSSVQSKSRFVLYRSDNDVGGGLIVFSTDEKRYAIVRSRVDASAESKVLAYLDYDSAALAYSFLDASDERVEVGVDTNGWLVLAGESFTVGLATLSVPNNGHRFLDFDRKFRARVHRAATVPYESFVRAYRSIEPVVSKEWRTIGFEFGESSITLSATSDLGVSAKSRVDFESIVPA
Ga0308413_000938_10669_11169	F070715	GGAG	MRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTTDSVQSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRDSLARHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEASTATSILTSGTSPATSA
Ga0308413_000938_12092_12526	F022362	GGA	MIANLLDAVIDAINGPPPAASVAASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIETVVNDVHSIASRITSQEVLERGGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYAVLESL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308413_000938

Overview

Ecosystem & Geography

Associated Families

Sequences