Scaffold Ga0326764_007601

Overview

Basic Information

• Taxon OID: 3300033830
• Scaffold ID: Ga0326764_007601
• Source Dataset Name: Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2101
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076263	Metagenome / Metatranscriptome	118	Y
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_007601_1074_1346	F081547	GGTGG	MPYLRGVFVNFGEETYYLSCGIVNGGNLDTETYTINNPELMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNEVLSQGNEVRPS
Ga0326764_007601_1349_1636	F076263	N/A	MLSAEDLSAILDDLEDICARIPEGVTFHPTLEIHRHYANEEATYIKFDCRNHRYILTIIREGVAKTTRVSSREELFRRLFPEYSPGFTEEIWGGG
Ga0326764_007601_1679_2059	F080247	N/A	MIVWGKLVDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKTTPGGEKIQVCVPIDATFMAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT