NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326764_004331

Scaffold Ga0326764_004331


Overview

Basic Information
Taxon OID3300033830 Open in IMG/M
Scaffold IDGa0326764_004331 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3018
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0326764_004331_1126_1500F087445N/AMSTASSKPTDELVQRLLNMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVVENARRNRKPIDRLADMFMDMMETMLKSKAMSLTDEDKAKLKEKLKEVMESEE
Ga0326764_004331_2200_2775F063848N/AVAKKKRSVHDPTLSVIHYQEQLEKMSKAFEKSSTRRNQRAVNGFMILKQVQNAVRDYLNEVSASMKAPVIAQLAVEFIGIAMAYLKASNEGYNSYALTGRVAQIATLRATHIVHATTLSCGQVGEIINGMLKKLSGVTADPLTFTENDDVCEAKVANPLAKLSVASASTGYTVALTDILKAKTPEEVLMAK
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