Scaffold Ga0326764_001102

Overview

Basic Information

• Taxon OID: 3300033830
• Scaffold ID: Ga0326764_001102
• Source Dataset Name: Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7066
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028973	Metagenome	190	Y
F032562	Metagenome	179	N
F058700	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_001102_142_462	F028973	AGGTGG	VAQVTEEEEKRAQETVDEIIRRLEEYHVNGNWDEFFDNDVLDVLLMVTPDKEDIFGFSILLGYGGPNVEFLCDRGDGKIIYSYGGVEVKKDVDPEICDDIINYLDS
Ga0326764_001102_1991_2644	F058700	N/A	MAHKGQVMGMSDQEMTADDIMDYLESAMVNGWLEDLVRSDFPPWADAYEQIQMLEDIEGDDYTLNDEDSIDHLSRLSDMDYDTFKEMWDRLTSEQKNEVLGSVIHEMALYGIEWLFKDIAYDLVYNEKYNKDAGKVVEAAKDYLNKRISYDDLMDRIADVFWPNEEDKESTAYEDFLNATGLADYIDNDELNEIIKEYLVEKVGHRLSLLSEDVKQK
Ga0326764_001102_3507_3854	F032562	AGGAGG	VSEEKGSKGTLLSEDRLSVKTFADTNHNTTWYFAEIEVNGKRITSEKHESIDVFKDFERTVENLYRKAEILDELSSPRAADALAEDMLNDIAELILLTRALLDNIKSWRLWKQEP