Scaffold Ga0326764_000947

Overview

Basic Information

• Taxon OID: 3300033830
• Scaffold ID: Ga0326764_000947
• Source Dataset Name: Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7826
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_000947_2966_3241	F056742	N/A	MFIIEVEKVYGVKVKSCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYACVKCNSVLTAEESITHTLKHMKQLGYNPLAYNENI
Ga0326764_000947_4602_4913	F077502	GAG	MVNQVTDVAHIILWIEKNLPEEGKLSELIDNIFSLIQEIILNNLSQGRQPISFESVREIADAFKEMVYRSIEQSIGVLTEDVKEQVDAYFFKKLSEIYSKYYE
Ga0326764_000947_4923_5291	F070317	N/A	MPTLEEIKELNLEKIVKDAQEGEVCVVEKILKGKLTDLIPLVRDPANLSQNAIEFIQRRGNDIFYLFQCATREGRNVKLLVRQSFDPKSTFYRLMKKYHTIKVGDEIVVFYNPEKRRYDFLL