Scaffold Ga0326764_000648

Overview

Basic Information

• Taxon OID: 3300033830
• Scaffold ID: Ga0326764_000648
• Source Dataset Name: Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10242
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F087443	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_000648_1459_1953	F090626	N/A	MSRIVKFENIYFGRNSLVKLFANKTHLENSTDYDGTTLAFLLDVSDFTNTNALLTHFAIVNGNEIRPILMDWNLRTIHGRLLILLDQLPGPHDTKMLLKRFESIIENQRPETIKYIAGQYARALTDAKGLHPIYNFLVQRIYLLKSIGIKKSEEEVRRLAEIYR
Ga0326764_000648_3913_4425	F097670	N/A	MMNYKIFDKEIFFETDHIITINLKTNEINHEEKLYFYDGKELKELKDFQEYNLKQYEIAQKIQEEFTKFSTKHAKPPIGYITIGNIIFEYMLNRNNVILIAYANISKIEDEISKEITNDIIKIIYKSKMIFNKEWNFESIQNLSPEVKDNTTKIIEKALKSAKMILKNNL
Ga0326764_000648_5387_5803	F099549	N/A	MDTNPQYTYAIPDLKTMFQIDFGNIIREIVSLLTYSDISTDTRTFDNEELKNKLRAAIAYALGLLASTWGYSMSAKVQQDVLIAKESLKALFDRIVRDPELTYPDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
Ga0326764_000648_9133_9348	F077497	N/A	MDKEQINKIEEIIERHLFEETNNTDYELKKMDVIIKYLIYQKLKDIDERLNNIDQTLYESANPGIWDDEKW
Ga0326764_000648_9326_9535	F087443	N/A	MGQRKNYWMTFLDSDNINYIDKEITKTAVDLDLDPSEIRAWIFKAFIYDPEIRAKIIEYIKKNGQGTNQ
Ga0326764_000648_9636_10043	F062912	GGA	MDPQAILAETYNLFLISDIVENESEIDRELEDLLANKDYNNMAKTLIYALMYTLNNDPAYRNIKQIYINDAIDLLYTIDRMGFNDERIMKKFINLLYQFYSYSLQYKINFIADKEKREWVKAKLDELVNIIQWEQ