Scaffold Ga0326764_000425

Overview

Basic Information

• Taxon OID: 3300033830
• Scaffold ID: Ga0326764_000425
• Source Dataset Name: Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13469
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F085905	Metagenome	111	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_000425_10432_10821	F070317	AGAAGG	MQTAVNNMSALEELKELNLEKVVKDAQEGEVCVVNKILKGKLTDLLPLVKDPANLSQRAMEFIQRRGDDIFYLIHCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINIFYNPEKRRYDFVL
Ga0326764_000425_10831_11142	F077502	GAG	MPGHGTDTAHIILWIEKNLPEESKLSELIDNIFSLIQEIILNNLSQGRQPISFESVREIADAFREIIYRSIEQSIGVLNEEVKEQVDAYFFRKLSDIYDKYYS
Ga0326764_000425_11681_12430	F077499	AGGTGG	MRDVFVFPNESLKVVGYPKITNAEIIFILTITIPIGDHPNADSPMDEKMRFLSAYMPLEFQKLQYMKAIDRALDILKYSLYSREDNVLFEIANKINDMYDVKELINKVKDVECMKDLKQINVMLTEAKRYIYPDLSLSRYASAQAKQLGVKKYEYYARVFQCYIDQDKDLDMLTLYRVSNLVYNYIRINNLSNIMKKMQFKNDRIAQLMEKIKQRVKITLEAMADRKPVEPDVNVLNSITIRIKEIDLG
Ga0326764_000425_12437_12778	F056742	N/A	MKLADCRYKCKQSYFRKSLFVRMFIVEVEKVYGVKVKSCEEFCKFYVLFLSVAEILYGKHYNYAIFKAIMRGRPNLYVCVKCNSILTAEESIVHTLQHMKQLGYNPLAYEENI
Ga0326764_000425_2274_2648	F087445	N/A	MTSSSVKPGDELIQRLINMSEYDLKRLFKTIPIDKRLALALDTIQEYQSIQNRFNRLLDGLAMNAPKVKETIETARRNKKPIDRLADMFIDLMETMLKSKAMSLTDEDRAKLKEKLKEVMENEE
Ga0326764_000425_3346_3606	F076264	GAG	MSAISNAIQNMVNGLQNLFVAMIDLFANAVNAIGNTLSSLANPIGYLIGVLAVFGSLITIIYYVFRGRGGISGLVGGIKGFFTSFL
Ga0326764_000425_386_946	F085905	N/A	MEEKALFPSSRLSQFDYVAMNAYWLNVRLKYFTDPLLYAVATGIWVINLMDDVDIAETGTQKDFEYGLIYIYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSILEVIRRHLKK
Ga0326764_000425_999_1574	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEKSANRRNQRAVNGFAVLKQVQQTVRDYLNEVSQSMKAPVIAQLSVEFLGVAMAYLKASNEGFNSYALTGRVAQIATLKATDVIHTTTLTCSQVGEIINGLLKKISGATEDPLSFAEEDGVCKATVSNPLPKLSVASTSTGFTVSLTDILKAKTPEEVLIGK