Scaffold Ga0326764_000361

Overview

Basic Information

• Taxon OID: 3300033830
• Scaffold ID: Ga0326764_000361
• Source Dataset Name: Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15117
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (46.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326764_000361_11901_12287	F075084	N/A	VDYARLINFTNQNFQGRLFRAGARAMAYAKRLLASWYGYDTGILTETALRRILKRSIIYCNIMKRLNVESEYCRRYTYYDEVPCDLVSVFTVDIAYSDIIHMIANYNSETVSKILTKMTEVCSTYEVK
Ga0326764_000361_12602_12868	F080245	N/A	MIFVWSARVTIPGFRDEIFVSPALINRLAELTEDVYEVGMFIVPHRGHALLFLPTMVIKIDDELMKNLEQTSIEDLNIPLNTISNVFT
Ga0326764_000361_12865_13113	F087442	GAGG	MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVITVGEEGTKINLLNIIDVRFLVERNENCVAIKL
Ga0326764_000361_13110_13382	F081547	GAG	MPYLRGVFVNYNEETYYLSCGVVNGGSLDTETYTISNPELMMVRMGRDLYIVTSELKLLIPVEPIRVLLNSETSKVYNEMLSQGNEVKLA
Ga0326764_000361_13385_13660	F076263	N/A	MLSAEDLSAILDDLEDLCARIPNGVTFHPTLEIRRNYANEEATYIKFDCRNHRYILTVIREGIAKTMRVSSREELFRRLFPEYTEDIWGEE
Ga0326764_000361_13703_14083	F080247	N/A	MIVWGKIIECMIDTDVNYINGEFFGSQLRIKGKFLVFGNLYTFERTISETGTVQICVPIDSTFMTYYQGMIAIMSFYIKDRDIYANISLTDPDTIKEFINMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0326764_000361_14076_14468	F061983	AGAAGG	LKKYIFKVKVVPLKLFNEEGVLSEQEFQEIITTRIYKGMKVLEIKDLGYDNFWRVIHYHEIVAISEGGGLFDCYYGDVINVGKLKDVGAIVIKENDSEPLKTMKTLVARWYNKKLIEEEKAYEMCNKFVM