Scaffold Ga0334854_035661

Overview

Basic Information

• Taxon OID: 3300033829
• Scaffold ID: Ga0334854_035661
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1194
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004328	Metagenome / Metatranscriptome	443	Y
F009486	Metagenome / Metatranscriptome	317	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334854_035661_181_795	F004328	N/A	MTDQTRNSASVPPATPSAPAGTTPPAAQRGPTIHIADEFGTAKRNLPPVKVLLLTTAGILVIVGIYSFIQRAKPQGAGSLDNVTAVDLPGQNAVLVALTFTLHNSGQKSLWVHGIKGKVVTSTGELSSDAVSAVDFDRYYQAFPALKADTQPPLAPEDKLQPGQQITRTVIVSFPVALADFKDRRSVSVVIQPYDQPVPIVLTK
Ga0334854_035661_3_134	F009486	N/A	IAQCSDVALAVLEVDGSISCLKYDEIKPDANTHLVRRRFIQKK