Scaffold Ga0334854_000069

Overview

Basic Information

• Taxon OID: 3300033829
• Scaffold ID: Ga0334854_000069
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47967
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F031166	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334854_000069_14_721	F031166	N/A	MAFKNLRFSTYLAKGEMERDYLERICGVGADRIRLGAASSLSRQSAMWDERAPWITFFTEPYETDLWRTEAIYREVLPRLCAVARGAGKAVVLKLHPFESARRRRRLVARILNEDDRKLVTVTDAPLSREIFQKTWCAVTVESTVAFECAAIGVPVFLCAWLRHALAGYATQYLRFGVGRRLECPDDLLRIGDWLGEAMSPADTASRLVQPATREGLLDVLCQPAPGGLRSMSKV
Ga0334854_000069_24953_25513	F000525	N/A	LITLGCSPRDFLTRRLAADLILASDAFKAPQLFWVRTGIISNKDFSSPDFMVLQSRGWIVGSEKKCPAGIDPPPCWDVLLTPVGIDTMRPLILNGLPENGPTIQVARRELLGVSGISKAGNFAEVEFAWHWVTVNQVGAALYDSGVHYRSTVSFREYDDGWRMVEQNVPSNQTLDEALHNGQPIAP