Scaffold Ga0334848

Basic Information
Taxon OID	3300033827 Open in IMG/M
Scaffold ID	Ga0334848_000618 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033827 Open in IMG/M

Scaffold ID

Ga0334848_000618 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11680
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11680

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0466	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0466

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334848_000618_5039_5542	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPHGTVANTVGKLREFAAESIQ
Ga0334848_000618_5596_5964	F004301	N/A	MEPSVNARNAKRQLDTLRKQLATAHADLEDVDYNLSIVEMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0334848_000618_5973_6347	F003764	GAG	MQIQLDSPYAHDENPAALLAGAEIEAAGLHRCLKIVRLWSQFSTLSRTRRDEMVEEAQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDNWECPPAEQGLLFPIPNEPTTEASPVTARK
Ga0334848_000618_6854_7183	F003942	AGGA	MIHRYEDVELIEVHSEYLECSFTVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTIAQPGMAEAIEMQRQAGHTIYADHLSAMLYGTGLNPARS
Ga0334848_000618_7208_7714	F003389	GGA	MQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHEPLELSEPISCDHFCEEEDSPLSPDEIDKLCERLNMGFCN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334848_000618

Overview

Ecosystem & Geography

Associated Families

Sequences