Scaffold Ga0334848_000526

Overview

Basic Information

• Taxon OID: 3300033827
• Scaffold ID: Ga0334848_000526
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12745
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0466
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004581	Metagenome	432	Y
F012741	Metagenome	277	Y
F038945	Metagenome	164	N
F069592	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334848_000526_11857_12297	F004581	GGAGG	MQHAEIYNGHAGRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLLNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLKATAAYSIERAGAHSRHILAPTRHPVQLER
Ga0334848_000526_12439_12744	F038945	N/A	FAASKKAALREFSVLATNVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTPQELER
Ga0334848_000526_6326_6610	F069592	AGG	MNENHTGHTVLSPLFAQNLVRHLEQLNKVDQFTESSNLALPFALFQLFQTDTPVASSNEFPALLGGRPLPRSSRAASSATHPSGMKTPQRPLTN
Ga0334848_000526_6619_7206	F012741	N/A	MKEESMFTPQSRNPLGVLSLTNSAGGIFQSLKRQTAAAGFIAYCGIISAVLGLWMWLWRDTTLEDKTLTRTVGAALVLSSFFFYQHLRIGFGAFFLILTSTGIGIAVHYSNHSLIHGDRPEIPAIVLIAIGLIAYFAQTRYLPGFIFLLASSATIIGILWFKSAFFCPIIMVIAGVVLIILGMLIRSLAMFNSFM