Scaffold Ga0334837_104269

Overview

Basic Information

• Taxon OID: 3300033823
• Scaffold ID: Ga0334837_104269
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 584
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3531
  • Long. (^o): 19.0476
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062360	Metagenome	130	Y
F075559	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334837_104269_323_583	F075559	GAG	METIREVNPARLAWGTFDHAKSDYMNEGDIPTSYSGDCIAMGQPVRKPFRMDGEIWLTIALSNDGARAYRLCPLRVFNGTPTNYRDK
Ga0334837_104269_95_313	F062360	AGG	MIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPIPNDPTTEASPATARK