NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334837_081958

Scaffold Ga0334837_081958


Overview

Basic Information
Taxon OID3300033823 Open in IMG/M
Scaffold IDGa0334837_081958 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)708
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3531Long. (o)19.0476Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098523Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334837_081958_5_691F098523N/AVVQRTGYTLSVSPNVYYHGPDVEIRPSVGPKIRFHSSRSPAELVAAMDTFVQVTRMAARLRPKWATRQMALITGSNPGSPVLVYEPWCACIAIIPRPASFNQLHKHSPVKKYKIGASPKTIVTDLIRLHQQNTPKRSWESVVADWNCLYSASFGHELTLSASYIYAWNGMRFLMDGDDLSMDVWGPVFSVAFPEAIRLLESIQAVLGKTVKGRGNEEGLPRGRQTPSE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.