NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334837_057494

Scaffold Ga0334837_057494


Overview

Basic Information
Taxon OID3300033823 Open in IMG/M
Scaffold IDGa0334837_057494 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3531Long. (o)19.0476Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F007956Metagenome / Metatranscriptome341N

Sequences

Protein IDFamilyRBSSequence
Ga0334837_057494_2_466F004581N/AMLPDETAASHRLSQGQTQPQIAQPARSENRRIDMKQAEIYNGHAGRFHRMANHIELSMTPQHQQRHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLDLSAGMIPGEERSQTVRELFMMTAECSEYDQTVKYTILPLPDREMETAKLLKAAAAY
Ga0334837_057494_510_956F007956N/AKINCLNDKYPRDSFSLLNPDVAKEFMATAFYHNAAASKELKSFDKDVFASCKKAALREFSALSAGVETGAAGTKDFNNTFTMNIERPPNGALTQNLRIAVKPLPGKREELAAIFGKCAWYHSNQSGRTPEEKEQRRAARTNTTQELGR
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