Scaffold Ga0334837_021527

Overview

Basic Information

• Taxon OID: 3300033823
• Scaffold ID: Ga0334837_021527
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3531
  • Long. (^o): 19.0476
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F063278	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334837_021527_1261_1557	F045645	GGA	VKLQETTLKTLKYVARVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPIKNYTDMAAPKPRVPSAPKPAEVPELVM
Ga0334837_021527_1691_2248	F063278	N/A	MKERYLIIGLQPATQRISLDSEWAESATGAMTAVAAIRKAADVLLAWTPGQMRQMADLLTAMTPQQIAFNRRSAELEERAFRASQMAPPQVHTGGPQNQRFLVISYNPVTEAVHLDTELSDRPDAALSSVAGVRDLAHVLLAFTPEQLREMAANLEGCTAEQIGRNRRAAEQEEQTFYAELTTRQ
Ga0334837_021527_601_1038	F038201	N/A	MDVFTRNVQFMAGQVAGEHAAQTFQMLQATFPGLRNFEQLRAFARLYVSTGLKPLQFRPLPSDVDPQRLKGELALRFHNGMIVLAPDERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHTLDPEACAPTAVGMFPLDLS