Scaffold Ga0334837

Basic Information
Taxon OID	3300033823 Open in IMG/M
Scaffold ID	Ga0334837_011866 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033823 Open in IMG/M

Scaffold ID

Ga0334837_011866 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3821
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3821

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3531	Long. (^o)	19.0476	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3531

Long. (^o)

19.0476

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045016	Metagenome	153	N
F045053	Metagenome / Metatranscriptome	153	N
F052500	Metagenome	142	N
F091215	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334837_011866_1291_1983	F091215	GAG	MRRTVEETIRFYREDGAYVLVHEGTLDGGSNLHYIVGLVERKMRLKLKSLGYFGHGTHRQERFRSGQPIDEHAFARRTRQLLRLPLSALAACLMAKGVLGPKPGEPAFGNLNERTRAASLKEWAISYYEASEITCPESLNVLESNRLFRWRRIPFECLRHNLQGSYEIPVKVECYRQLLAKGHPLPPLICRCRGWELFEGYHRLRAHEMVESETIPCVIIGSGREGLGLC
Ga0334837_011866_1967_2428	F045053	N/A	MTTVASYSIPGFGEVNVVQQNDAGNRFWDLFAASGEWLNEGHPFRYKPRRVQVEAFLAQRLKEALVRMKKECKRFRITQEDLDELIHEAAQAGNARLSQASDEKQQERLITTAEEQAARVNNGGRASQLVYLLEAYGEAGAVRALRERYETNG
Ga0334837_011866_2627_3025	F052500	N/A	MTTQAQRHMASEIASEISKLQGIKSAVVDDDNGYGSFNVFIELRNRLEGHYASRRIEFEISLHGLMARITRIIERHGARLEWHEPPRRQYSRQGHGKKLFEGYSTDSYKISVHISQPEAEVQRQQETQLAFG
Ga0334837_011866_3093_3560	F045016	GGA	MTPAIAQPPVVTGTSLINAACRKYHEAVEKFKRVEAEWQTLPTQEAVTLILEIQGILRETRQLLDQGTAQMPDMNSPEWEEAIGKNTRDQIAECQQKAYDLGNRVDDVLAGSDHLIQTCLAHQEAYERHQTAKALSLVVAGTILTIGVALYFLLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334837_011866

Overview

Ecosystem & Geography

Associated Families

Sequences