Scaffold Ga0334828_011553

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334828_011553

Scaffold Ga0334828_011553

Overview

Basic Information
Taxon OID	3300033822 Open in IMG/M
Scaffold ID	Ga0334828_011553 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3028
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F012316	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334828_011553_1904_2425	F012316	AGAAG	MAVSPWLLSLLEGEGNMSTTLIDQPTGPMHRCGKVWEGLRSLGTRGISAVNLWRRHQDQSALEKALARIIETANGHRTKGLPKGAPVYVVLRDKADARIQVFAMKWGVDIAIIKAQAPALADLDSLCVPDKQIPAGLKLLAALLGTILSLVLLGAASGLVHAGHDWVMRFVVR
Ga0334828_011553_2466_2795	F005296	GGAG	MAAWLLWFVPSFEAGFWSALIAGKLRGRGKTCELLVYGRPARTCLPLIDERLRKAAGTPTKSQAFAARRIAAGLRWFANTRAMDYAILLGLRRIWPKGQTISTEVKMCL

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