NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334817_110986

Scaffold Ga0334817_110986


Overview

Basic Information
Taxon OID3300033820 Open in IMG/M
Scaffold IDGa0334817_110986 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064239Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0334817_110986_16_528F064239N/ADPSSRWRRRYRDWQVALTKLEYVDRIIDLEGACRGTPDNQRSGSQATYLELRETVAEYFDINHALDPDLAEYRRDLLDIFPRRSARARGSQGALSAARFIQQHQRLLISKLGGWIGDSDRRVIGKFLRELQALCTYEHLVVPENRRNEKLVDLTIVATWHVVDGIHRLSE

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