Scaffold Ga0334816_069555

Overview

Basic Information

• Taxon OID: 3300033819
• Scaffold ID: Ga0334816_069555
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 653
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010139	Metagenome / Metatranscriptome	308	Y
F025426	Metagenome	201	Y
F070324	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334816_069555_18_329	F025426	N/A	MVAWQGSGPGRLGNALVFVHDFSLYLRAPEDADVGYEDLFNWIVNDIPAGSSLRMLHTQIDINCEPMDFYLPSARRNTVVISADGATFEYFEVPVRLIESYNP
Ga0334816_069555_368_505	F010139	GAG	MQSPQGEIKEVEATAESLSPLMASGWTQVPTPVGHKPAVPAEEEK
Ga0334816_069555_508_651	F070324	AGGAGG	MANINELMEGWGFGKQTAIGAANLVTAMWRHTNLNTKPWAKVPVNEDD