Scaffold Ga0334804_001030

Overview

Basic Information

• Taxon OID: 3300033818
• Scaffold ID: Ga0334804_001030
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16510
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000995	Metagenome / Metatranscriptome	810	Y
F007196	Metagenome / Metatranscriptome	356	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334804_001030_4197_4925	F000995	N/A	VAADGRGSTVDHLTARRLAIWLAARPQQPVFAQGLGRFAETGMIDPRLKMQLRMRARSGTYTDRSQAARLLEYCIGRGTDLGPISENFGAACNQVDQADVMLARLHDRAREGLALPEQSWPETDGPGIIALAQRNPDSQTVSLILDATTANTALFAIAAHADEREAHIREVQRYGETLPEGSYGRRNRQAIAARETRVAARLRAVERAYRIAVERNVMYRAPESTGSHRSSQHTADKEIELE
Ga0334804_001030_7305_7505	F007196	GGCGG	MDMRELQDPYDLPFPDDSGRWPPGRPEYAIVVDRLRGWQPGGPLSLAEVLETGRTRQPEPDLEAEP