NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0026679

Scaffold Ga0334980_0026679


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0026679 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2470
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001781Metagenome / Metatranscriptome635Y
F007644Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0026679_1000_1140F000441AGGAGGMKMSDQYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRVEQIS
Ga0334980_0026679_1127_1444F001781GGAGMKPEDKDKLNKCLEILGTTDLGLSMVWLYTWSTIKNFLEADTTDWTVLATEDEMWDHLCEAVQAGQGFSLEYGAEQHYEEVMEWMLNRGYMTDPLDEEEAEDEDE
Ga0334980_0026679_1434_1706F000263AGGAMNSEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEEDLASALEQEARSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIGARNEA
Ga0334980_0026679_1882_2034F007644AGTAGMKLHLISLEQDLESNPESINVIDIPGQIEATRHLLSVATDIMNNSNERYE
Ga0334980_0026679_764_910F000852GGAMTTKREYLKQQGITVGVRGRFSGAAKVALAEAEKNGVKFTAEVTKKAK
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