NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0024395

Scaffold Ga0334980_0024395


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0024395 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2586
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0024395_1264_1458F000403GGAMSDFVEIIYPQEMRARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0334980_0024395_1455_2108F012452AGGMAGFLENYEGNKERTDRWLRTFPNGRLEAHIVEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAFNPNMKRWFCEDTTTSALMRVMALVMGGAEKATKETMQQVKTNDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV
Ga0334980_0024395_2108_2269F009883GGAGMNEASIVIMCLIGGAFWAIMSYSVGFREGQRQGYTRGRAVARHAVSADRKVSK
Ga0334980_0024395_616_807F003182AGGAGMHILQFDCSICSKLYGKSKQRHGLKKGAELTEHEWFAQCMSCGAFGIKIVDDSRIQELSDANL
Ga0334980_0024395_788_1267F000903N/AMIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMVAELVVAKRLGYDYTPGITWDKSKADVGQHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIDTLMRSNYAHPAI
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