NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0021473

Scaffold Ga0334980_0021473


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0021473 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2771
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F003603Metagenome / Metatranscriptome477Y
F007644Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0021473_1486_1623F000441AGGAGGMSDVYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRIEQVEG
Ga0334980_0021473_2370_2771F003603AGGCGGMKNKEQQIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRVVEVVAWIIEKQARRYEREIQNGGQVSEGLAIAYKLDQVMDKIKDKNTFEHVKLPITDGERKKLIDNLPKVKEQSYRYSWLHETNNGPNATLNV
Ga0334980_0021473_289_567F000868GAGGMSDPYGTIGHYRKGGIMSFLENENQMVIDATYQEIGEMLVEDWVNSNLDEGQLFADFRFAEMADNNYLKGRFNLFYDLKPGDQYYLEYDEEN
Ga0334980_0021473_739_906F007644N/AMEYMKLHLISLEQDLEMNPESINVIDIPGQIHATRHLLSVATDIMNSSNERYNNE
Ga0334980_0021473_899_1192F000263AGGMNNEDIGLPPHLQRLVNYDINPLDIMHGELKNLMLIWEREYESAEAMEVATDYTEFELTLERKYAEGFLDALTALYKMTYELAFAIQERNKRFEARG
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