Scaffold Ga0334980_0015996

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0015996
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3228
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F032155	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0015996_1538_2143	F001897	GGA	MGFLDNYEGNKERTDRWIKTYPEGRLEATIINFDADKGSILVRAAAWRNQTEIEPAGIDFAFGYQAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATKETMEKVNAADVYDPWATKFGDVPSYKTSAEAEMAGTPSFGSSDESPSVPECHHGAMRWNQSKPDAAKSWGGYFCSEKIKENQCTPRWYVLRSTGKWEPQV
Ga0334980_0015996_2404_2598	F032155	AGG	VGEWTAVGGLVITTLAAVYSSMKIIIKAVMSELSPNSGSSLKDQVSRIEARLDYLYTQLIEEKK
Ga0334980_0015996_708_890	F003182	AGGAG	MHILQFDCSICKKLYGKPKQRHGLKKGAELTAHEWFAQCMGCGAFGIKIVDDARIEEMSL