Scaffold Ga0334980_0010862

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0010862
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3967
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F014004	Metagenome / Metatranscriptome	266	Y
F071172	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0010862_3233_3448	F071172	N/A	MNLTSQQLNQLVENYAERIVDDMDTKCLIQFVYDTIVENLSHLNEEDVLNEIANVYDEDVIQELVESVTVQ
Ga0334980_0010862_3450_3686	F014004	GAG	MRTLTLQVTEVSFDFDDLDFPPEQQQQVVDEVLGNVFEVEVDDDDDDEAIADALVEEVTDYAGWCVCSLDFVHVLNTH
Ga0334980_0010862_3813_3944	F001968	N/A	MFDELWSEIADAPGEIFDIPELRDLDDENKFNVNEYLNANYDY